IL_3J9Z_115

3D structure

PDB id

3J9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

ACCCC*GAACU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9Z_115 not in the Motif Atlas

Geometric match to IL_4V9F_104

Geometric discrepancy: 0.2258

The information below is about IL_4V9F_104

Detailed Annotation

Symmetric double minor groove platform

Broad Annotation

No text annotation

Motif group

IL_58103.11

Basepair signature

cWW-cSH-cWS-L-tSW-R-R-cWW

Number of instances in this motif group

9

Unit IDs

3J9Z|1|LB|A|34
3J9Z|1|LB|C|35
3J9Z|1|LB|C|36
3J9Z|1|LB|C|37
3J9Z|1|LB|C|38
*
3J9Z|1|LB|G|44
3J9Z|1|LB|A|45
3J9Z|1|LB|A|46
3J9Z|1|LB|C|47
3J9Z|1|LB|U|48

Current chains

Chain LB

5S ribosomal RNA

Nearby chains

Chain L7

50S ribosomal protein L5

Chain LA

Large subunit ribosomal RNA; LSU rRNA

Chain LK

50S ribosomal protein L18

Chain LZ

50S ribosomal protein L31