IL_3J9Z_136

3D structure

PDB id

3J9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAG*CAGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9Z_136 not in the Motif Atlas

Homologous match to IL_5J7L_021

Geometric discrepancy: 0.2158

The information below is about IL_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_33323.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

3J9Z|1|SA|C|440
3J9Z|1|SA|A|441
3J9Z|1|SA|G|442
*
3J9Z|1|SA|C|492
3J9Z|1|SA|A|493
3J9Z|1|SA|G|494
3J9Z|1|SA|A|495
3J9Z|1|SA|A|496
3J9Z|1|SA|G|497

Current chains

Chain SA

16S ribosomal RNA

Nearby chains

Chain SD

30S ribosomal protein S4