IL_3J9Z_143

3D structure

PDB id

3J9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

3J9Z|1|SA|A|572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9Z_143 not in the Motif Atlas

Homologous match to IL_4LFB_022

Geometric discrepancy: 0.154

The information below is about IL_4LFB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

3J9Z|1|SA|C|569
3J9Z|1|SA|G|570
3J9Z|1|SA|U|571
3J9Z|1|SA|A|572
3J9Z|1|SA|A|573
3J9Z|1|SA|A|574
3J9Z|1|SA|G|575
*
3J9Z|1|SA|C|880
3J9Z|1|SA|G|881

Current chains

Chain SA

16S ribosomal RNA

Nearby chains

Chain SL

30S ribosomal protein S12

Chain SQ

30S ribosomal protein S17