IL_3J9Z_146

3D structure

PDB id

3J9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUC*GAUAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9Z_146 not in the Motif Atlas

Geometric match to IL_6CK5_002

Geometric discrepancy: 0.3258

The information below is about IL_6CK5_002

Detailed Annotation

8-nt loop receptor

Broad Annotation

Loop-receptor motif

Motif group

IL_36516.3

Basepair signature

cWW-cWW-cSH-cWW-L

Number of instances in this motif group

7

Unit IDs

3J9Z|1|SA|G|597
3J9Z|1|SA|U|598
3J9Z|1|SA|C|599
*
3J9Z|1|SA|G|639
3J9Z|1|SA|A|640
3J9Z|1|SA|U|641
3J9Z|1|SA|A|642
3J9Z|1|SA|C|643

Current chains

Chain SA

16S ribosomal RNA

Nearby chains

Chain SH

30S ribosomal protein S8

Chain SQ

30S ribosomal protein S17