IL_3J9Z_153

3D structure

PDB id

3J9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGGAG*UC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9Z_153 not in the Motif Atlas

Homologous match to IL_4LFB_032

Geometric discrepancy: 0.1175

The information below is about IL_4LFB_032

Detailed Annotation

Left turn

Broad Annotation

Left turn

Motif group

IL_29346.2

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

3J9Z|1|SA|G|774
3J9Z|1|SA|G|775
3J9Z|1|SA|G|776
3J9Z|1|SA|A|777
3J9Z|1|SA|G|778
*
3J9Z|1|SA|U|804
3J9Z|1|SA|C|805

Current chains

Chain SA

16S ribosomal RNA

Nearby chains

Chain LA

Large subunit ribosomal RNA; LSU rRNA

Chain LN

50S ribosomal protein L2

Chain SK

30S ribosomal protein S11

Chain SU

30S ribosomal protein S21