IL_3J9Z_160

3D structure

PDB id

3J9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9Z_160 not in the Motif Atlas

Homologous match to IL_4LFB_038

Geometric discrepancy: 0.3591

The information below is about IL_4LFB_038

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

58

Unit IDs

3J9Z|1|SA|G|953
3J9Z|1|SA|G|954
*
3J9Z|1|SA|C|1226
3J9Z|1|SA|A|1227
3J9Z|1|SA|C|1228

Current chains

Chain SA

16S ribosomal RNA

Nearby chains

Chain S1

Elongation factor G

Chain S6

Transfer RNA; tRNA

Chain SM

30S ribosomal protein S13

Chain SS

30S ribosomal protein S19