IL_3J9Z_186

3D structure

PDB id

3J9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAGCG*UGUUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9Z_186 not in the Motif Atlas

Geometric match to IL_7VYX_008

Geometric discrepancy: 0.3206

The information below is about IL_7VYX_008

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

3J9Z|1|LA|C|1164
3J9Z|1|LA|A|1165
3J9Z|1|LA|G|1166
3J9Z|1|LA|C|1167
3J9Z|1|LA|G|1168
*
3J9Z|1|LA|U|1181
3J9Z|1|LA|G|1182
3J9Z|1|LA|U|1183
3J9Z|1|LA|U|1184
3J9Z|1|LA|G|1185

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain LP

50S ribosomal protein L21

Chain LY

50S ribosomal protein L30