IL_3J9Z_215

3D structure

PDB id

3J9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UG*CAAG

Length

6 nucleotides

Bulged bases

3J9Z|1|LA|A|2542

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9Z_215 not in the Motif Atlas

Homologous match to IL_5J7L_342

Geometric discrepancy: 0.143

The information below is about IL_5J7L_342

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_02555.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

3J9Z|1|LA|U|2522
3J9Z|1|LA|G|2523
*
3J9Z|1|LA|C|2540
3J9Z|1|LA|A|2541
3J9Z|1|LA|A|2542
3J9Z|1|LA|G|2543

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain L5

50S ribosomal protein L36

Chain LF

50S ribosomal protein L13