IL_3JA1_004

3D structure

PDB id

3JA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUAAG*CGUUAUAAC

Length

14 nucleotides

Bulged bases

3JA1|1|LA|U|102

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JA1_004 not in the Motif Atlas

Homologous match to IL_9DFE_004

Geometric discrepancy: 0.4041

The information below is about IL_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

3JA1|1|LA|G|81
3JA1|1|LA|U|82
3JA1|1|LA|A|83
3JA1|1|LA|A|84
3JA1|1|LA|G|85
*
3JA1|1|LA|C|97
3JA1|1|LA|G|98
3JA1|1|LA|U|99
3JA1|1|LA|U|100
3JA1|1|LA|A|101
3JA1|1|LA|U|102
3JA1|1|LA|A|103
3JA1|1|LA|A|104
3JA1|1|LA|C|105

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain L0

50S ribosomal protein L29

Chain LW

50S ribosomal protein L24