IL_3JA1_007

3D structure

PDB id

3JA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JA1_007 not in the Motif Atlas

Homologous match to IL_5J7L_251

Geometric discrepancy: 0.1108

The information below is about IL_5J7L_251

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

3JA1|1|LA|C|239
3JA1|1|LA|C|240
3JA1|1|LA|A|241
3JA1|1|LA|G|242
3JA1|1|LA|U|243
3JA1|1|LA|A|244
3JA1|1|LA|G|245
*
3JA1|1|LA|C|253
3JA1|1|LA|G|254
3JA1|1|LA|A|255
3JA1|1|LA|A|256
3JA1|1|LA|C|257
3JA1|1|LA|G|258

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain L6

50S ribosomal protein L35

Chain LN

50S ribosomal protein L15