IL_3JA1_016

3D structure

PDB id

3JA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

3JA1|1|LA|G|801, 3JA1|1|LA|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JA1_016 not in the Motif Atlas

Geometric match to IL_5J7L_260

Geometric discrepancy: 0.17

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

3JA1|1|LA|G|674
3JA1|1|LA|A|675
3JA1|1|LA|A|676
3JA1|1|LA|A|677
3JA1|1|LA|C|678
*
3JA1|1|LA|G|799
3JA1|1|LA|A|800
3JA1|1|LA|G|801
3JA1|1|LA|A|802
3JA1|1|LA|U|803
3JA1|1|LA|A|804
3JA1|1|LA|G|805
3JA1|1|LA|C|806

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain LF

50S ribosomal protein L4

Chain LN

50S ribosomal protein L15