IL_3JA1_044

3D structure

PDB id

3JA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGUU*AAGUG

Length

9 nucleotides

Bulged bases

3JA1|1|LA|G|1248

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JA1_044 not in the Motif Atlas

Geometric match to IL_3WBM_002

Geometric discrepancy: 0.2951

The information below is about IL_3WBM_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

3JA1|1|LA|C|1196
3JA1|1|LA|G|1197
3JA1|1|LA|U|1198
3JA1|1|LA|U|1199
*
3JA1|1|LA|A|1246
3JA1|1|LA|A|1247
3JA1|1|LA|G|1248
3JA1|1|LA|U|1249
3JA1|1|LA|G|1250

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain LF

50S ribosomal protein L4

Chain LN

50S ribosomal protein L15

Chain LS

50S ribosomal protein L20