IL_3JA1_046

3D structure

PDB id

3JA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

3JA1|1|LA|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JA1_046 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.1661

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

3JA1|1|LA|C|1208
3JA1|1|LA|U|1209
3JA1|1|LA|G|1210
3JA1|1|LA|C|1211
3JA1|1|LA|G|1212
3JA1|1|LA|A|1213
3JA1|1|LA|A|1214
3JA1|1|LA|G|1215
*
3JA1|1|LA|U|1234
3JA1|1|LA|G|1235
3JA1|1|LA|G|1236
3JA1|1|LA|A|1237
3JA1|1|LA|G|1238

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain LS

50S ribosomal protein L20