IL_3JA1_050

3D structure

PDB id

3JA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUAAG*CGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JA1_050 not in the Motif Atlas

Homologous match to IL_5J7L_292

Geometric discrepancy: 0.1856

The information below is about IL_5J7L_292

Detailed Annotation

UAA/GAN

Broad Annotation

UAA/GAN

Motif group

IL_89021.2

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

6

Unit IDs

3JA1|1|LA|C|1351
3JA1|1|LA|U|1352
3JA1|1|LA|A|1353
3JA1|1|LA|A|1354
3JA1|1|LA|G|1355
*
3JA1|1|LA|C|1376
3JA1|1|LA|G|1377
3JA1|1|LA|A|1378
3JA1|1|LA|U|1379
3JA1|1|LA|G|1380

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain L5

50S ribosomal protein L34

Chain LD

50S ribosomal protein L2