IL_3JA1_085

3D structure

PDB id

3JA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGAUG*CUUUA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JA1_085 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.3613

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

3JA1|1|LA|U|2106
3JA1|1|LA|G|2107
3JA1|1|LA|A|2108
3JA1|1|LA|U|2109
3JA1|1|LA|G|2110
*
3JA1|1|LA|C|2179
3JA1|1|LA|U|2180
3JA1|1|LA|U|2181
3JA1|1|LA|U|2182
3JA1|1|LA|A|2183

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain LC

50S ribosomal protein L1

Chain S2

Transfer RNA; tRNA

Chain SK

30S ribosomal protein S11