IL_3JA1_100

3D structure

PDB id

3JA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

3JA1|1|LA|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JA1_100 not in the Motif Atlas

Homologous match to IL_7RQB_102

Geometric discrepancy: 0.1423

The information below is about IL_7RQB_102

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.1

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

3JA1|1|LA|C|2636
3JA1|1|LA|U|2637
3JA1|1|LA|G|2638
3JA1|1|LA|A|2639
3JA1|1|LA|G|2640
*
3JA1|1|LA|C|2774
3JA1|1|LA|G|2775
3JA1|1|LA|A|2776
3JA1|1|LA|G|2777
3JA1|1|LA|A|2778
3JA1|1|LA|U|2779
3JA1|1|LA|G|2780
3JA1|1|LA|A|2781
3JA1|1|LA|G|2782

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain LE

50S ribosomal protein L3

Chain LL

50S ribosomal protein L13