IL_3JA1_113
3D structure
- PDB id
- 3JA1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- ACCCC*GAACU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JA1_113 not in the Motif Atlas
- Geometric match to IL_5J7L_358
- Geometric discrepancy: 0.2697
- The information below is about IL_5J7L_358
- Detailed Annotation
- Symmetric double minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_58103.11
- Basepair signature
- cWW-cSH-cWS-L-tSW-R-R-cWW
- Number of instances in this motif group
- 9
Unit IDs
3JA1|1|LB|A|34
3JA1|1|LB|C|35
3JA1|1|LB|C|36
3JA1|1|LB|C|37
3JA1|1|LB|C|38
*
3JA1|1|LB|G|44
3JA1|1|LB|A|45
3JA1|1|LB|A|46
3JA1|1|LB|C|47
3JA1|1|LB|U|48
Current chains
- Chain LB
- 5S ribosomal RNA
Nearby chains
- Chain L2
- 50S ribosomal protein L31
- Chain LA
- Large subunit ribosomal RNA; LSU rRNA
- Chain LG
- 50S ribosomal protein L5
- Chain LQ
- 50S ribosomal protein L18
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