IL_3JA1_114

3D structure

PDB id

3JA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGAUGGUAG*CGAGAGUAG

Length

18 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JA1_114 not in the Motif Atlas

Homologous match to IL_5J7L_359

Geometric discrepancy: 0.1046

The information below is about IL_5J7L_359

Detailed Annotation

Bacterial 5S Loop E

Broad Annotation

Loop E

Motif group

IL_56455.6

Basepair signature

cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

3JA1|1|LB|C|71
3JA1|1|LB|G|72
3JA1|1|LB|A|73
3JA1|1|LB|U|74
3JA1|1|LB|G|75
3JA1|1|LB|G|76
3JA1|1|LB|U|77
3JA1|1|LB|A|78
3JA1|1|LB|G|79
*
3JA1|1|LB|C|97
3JA1|1|LB|G|98
3JA1|1|LB|A|99
3JA1|1|LB|G|100
3JA1|1|LB|A|101
3JA1|1|LB|G|102
3JA1|1|LB|U|103
3JA1|1|LB|A|104
3JA1|1|LB|G|105

Current chains

Chain LB

5S ribosomal RNA

Nearby chains

Chain LA

Large subunit ribosomal RNA; LSU rRNA

Chain LO

50S ribosomal protein L16

Chain LX

50S ribosomal protein L25