IL_3JA1_115

3D structure

PDB id

3JA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGAAC*GUUA

Length

9 nucleotides

Bulged bases

3JA1|1|SA|G|31

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JA1_115 not in the Motif Atlas

Geometric match to IL_4K27_001

Geometric discrepancy: 0.201

The information below is about IL_4K27_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

3JA1|1|SA|U|30
3JA1|1|SA|G|31
3JA1|1|SA|A|32
3JA1|1|SA|A|33
3JA1|1|SA|C|34
*
3JA1|1|SA|G|550
3JA1|1|SA|U|551
3JA1|1|SA|U|552
3JA1|1|SA|A|553

Current chains

Chain SA

16S ribosomal RNA

Nearby chains

Chain SL

30S ribosomal protein S12