IL_3JA1_128
3D structure
- PDB id
- 3JA1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GAUUAG*CGACGAUC
- Length
- 14 nucleotides
- Bulged bases
- 3JA1|1|SA|U|244, 3JA1|1|SA|C|280
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JA1_128 not in the Motif Atlas
- Homologous match to IL_5J7L_014
- Geometric discrepancy: 0.1201
- The information below is about IL_5J7L_014
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.3
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 5
Unit IDs
3JA1|1|SA|G|242
3JA1|1|SA|A|243
3JA1|1|SA|U|244
3JA1|1|SA|U|245
3JA1|1|SA|A|246
3JA1|1|SA|G|247
*
3JA1|1|SA|C|277
3JA1|1|SA|G|278
3JA1|1|SA|A|279
3JA1|1|SA|C|280
3JA1|1|SA|G|281
3JA1|1|SA|A|282
3JA1|1|SA|U|283
3JA1|1|SA|C|284
Current chains
- Chain SA
- 16S ribosomal RNA
Nearby chains
- Chain SL
- 30S ribosomal protein S12
- Chain SQ
- 30S ribosomal protein S17
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