IL_3JA1_136

3D structure

PDB id

3JA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JA1_136 not in the Motif Atlas

Homologous match to IL_4LFB_019

Geometric discrepancy: 0.5555

The information below is about IL_4LFB_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31561.1

Basepair signature

cWW-L-R-tWH-tWH-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

3JA1|1|SA|G|450
3JA1|1|SA|A|451
3JA1|1|SA|A|452
3JA1|1|SA|G|453
3JA1|1|SA|G|454
3JA1|1|SA|G|455
*
3JA1|1|SA|C|477
3JA1|1|SA|A|478
3JA1|1|SA|U|479
3JA1|1|SA|U|480
3JA1|1|SA|G|481
3JA1|1|SA|A|482
3JA1|1|SA|C|483

Current chains

Chain SA

16S ribosomal RNA

Nearby chains

Chain SP

30S ribosomal protein S16