IL_3JA1_153

3D structure

PDB id

3JA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGAGUACG*UAAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JA1_153 not in the Motif Atlas

Homologous match to IL_5J7L_038

Geometric discrepancy: 0.1382

The information below is about IL_5J7L_038

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

3JA1|1|SA|G|887
3JA1|1|SA|G|888
3JA1|1|SA|A|889
3JA1|1|SA|G|890
3JA1|1|SA|U|891
3JA1|1|SA|A|892
3JA1|1|SA|C|893
3JA1|1|SA|G|894
*
3JA1|1|SA|U|905
3JA1|1|SA|A|906
3JA1|1|SA|A|907
3JA1|1|SA|A|908
3JA1|1|SA|A|909
3JA1|1|SA|C|910

Current chains

Chain SA

16S ribosomal RNA

Nearby chains

Chain SL

30S ribosomal protein S12