IL_3JA1_154

3D structure

PDB id

3JA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAC*GUAC

Length

7 nucleotides

Bulged bases

3JA1|1|SA|A|1394

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JA1_154 not in the Motif Atlas

Geometric match to IL_4V9F_097

Geometric discrepancy: 0.2615

The information below is about IL_4V9F_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

3JA1|1|SA|G|922
3JA1|1|SA|A|923
3JA1|1|SA|C|924
*
3JA1|1|SA|G|1392
3JA1|1|SA|U|1393
3JA1|1|SA|A|1394
3JA1|1|SA|C|1395

Current chains

Chain SA

16S ribosomal RNA

Nearby chains

Chain SE

30S ribosomal protein S5