IL_3JA1_162

3D structure

PDB id

3JA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GG*UCAUC

Length

7 nucleotides

Bulged bases

3JA1|1|SA|C|1200, 3JA1|1|SA|A|1201

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JA1_162 not in the Motif Atlas

Homologous match to IL_5J7L_048

Geometric discrepancy: 0.2139

The information below is about IL_5J7L_048

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

3JA1|1|SA|G|1057
3JA1|1|SA|G|1058
*
3JA1|1|SA|U|1199
3JA1|1|SA|C|1200
3JA1|1|SA|A|1201
3JA1|1|SA|U|1202
3JA1|1|SA|C|1203

Current chains

Chain SA

16S ribosomal RNA

Nearby chains

Chain SC

30S ribosomal protein S3

Chain SJ

30S ribosomal protein S10

Chain SN

30S ribosomal protein S14