IL_3JAG_091

3D structure

PDB id

3JAG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAG_091 not in the Motif Atlas

Homologous match to IL_5TBW_061

Geometric discrepancy: 0.0838

The information below is about IL_5TBW_061

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

3JAG|1|5|G|2358
3JAG|1|5|U|2359
3JAG|1|5|A|2360
3JAG|1|5|G|2361
3JAG|1|5|U|2362
3JAG|1|5|A|2363
3JAG|1|5|G|2364
*
3JAG|1|5|C|3858
3JAG|1|5|G|3859
3JAG|1|5|A|3860
3JAG|1|5|A|3861
3JAG|1|5|A|3862
3JAG|1|5|C|3863

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 1

peptide

Chain C

uL4

Chain P

uL22