3D structure

PDB id
3JAG (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon
Experimental method
ELECTRON MICROSCOPY
Resolution
3.65 Å

Loop

Sequence
GA*UUC
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3JAG_120 not in the Motif Atlas
Geometric match to IL_4V83_236
Geometric discrepancy: 0.3339
The information below is about IL_4V83_236
Detailed Annotation
Single stack bend
Broad Annotation
No text annotation
Motif group
IL_90729.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
30

Unit IDs

3JAG|1|5|G|3722
3JAG|1|5|A|3723
*
3JAG|1|5|U|3729
3JAG|1|5|U|3730
3JAG|1|5|C|3731

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain 3
Transfer RNA; tRNA
Chain i
eL36
Chain o
eL42

Coloring options:


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