IL_3JAG_168

3D structure

PDB id

3JAG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

GUU*GUCAGC

Length

9 nucleotides

Bulged bases

3JAG|1|5|G|5049

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAG_168 not in the Motif Atlas

Homologous match to IL_5TBW_132

Geometric discrepancy: 0.1703

The information below is about IL_5TBW_132

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_84428.1

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

3JAG|1|5|G|5000
3JAG|1|5|U|5001
3JAG|1|5|U|5002
*
3JAG|1|5|G|5045
3JAG|1|5|U|5046
3JAG|1|5|C|5047
3JAG|1|5|A|5048
3JAG|1|5|G|5049
3JAG|1|5|C|5050

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

uL3

Chain W

eL24

Chain d

eL31