3D structure

PDB id
3JAG (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon
Experimental method
ELECTRON MICROSCOPY
Resolution
3.65 Å

Loop

Sequence
GUU*GUCAGC
Length
9 nucleotides
Bulged bases
3JAG|1|5|G|5049
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3JAG_168 not in the Motif Atlas
Homologous match to IL_5TBW_132
Geometric discrepancy: 0.1703
The information below is about IL_5TBW_132
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_84428.1
Basepair signature
cWW-cWW-L-cWW-L
Number of instances in this motif group
2

Unit IDs

3JAG|1|5|G|5000
3JAG|1|5|U|5001
3JAG|1|5|U|5002
*
3JAG|1|5|G|5045
3JAG|1|5|U|5046
3JAG|1|5|C|5047
3JAG|1|5|A|5048
3JAG|1|5|G|5049
3JAG|1|5|C|5050

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain B
uL3
Chain W
eL24
Chain d
eL31

Coloring options:


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