IL_3JAG_222

3D structure

PDB id

3JAG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

GGCC*GAAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAG_222 not in the Motif Atlas

Homologous match to IL_4V88_430

Geometric discrepancy: 0.1029

The information below is about IL_4V88_430

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

3JAG|1|9|G|928
3JAG|1|9|G|929
3JAG|1|9|C|930
3JAG|1|9|C|931
*
3JAG|1|9|G|1010
3JAG|1|9|A|1011
3JAG|1|9|A|1012
3JAG|1|9|U|1013

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain BB

eS1

Chain NN

uS15

Chain bb

eS27