IL_3JAG_223

3D structure

PDB id

3JAG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

CGGGG*CAAG

Length

9 nucleotides

Bulged bases

3JAG|1|9|G|933

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAG_223 not in the Motif Atlas

Geometric match to IL_4V88_431

Geometric discrepancy: 0.1083

The information below is about IL_4V88_431

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

3JAG|1|9|C|931
3JAG|1|9|G|932
3JAG|1|9|G|933
3JAG|1|9|G|934
3JAG|1|9|G|935
*
3JAG|1|9|C|1007
3JAG|1|9|A|1008
3JAG|1|9|A|1009
3JAG|1|9|G|1010

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain BB

eS1

Chain NN

uS15

Chain aa

eS26