3D structure

PDB id
3JAI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon
Experimental method
ELECTRON MICROSCOPY
Resolution
3.65 Å

Loop

Sequence
UAUAGACAG*CCGAA
Length
14 nucleotides
Bulged bases
3JAI|1|5|A|1960
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3JAI_081 not in the Motif Atlas
Homologous match to IL_8C3A_057
Geometric discrepancy: 0.3139
The information below is about IL_8C3A_057
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_90538.5
Basepair signature
cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L
Number of instances in this motif group
6

Unit IDs

3JAI|1|5|U|1957
3JAI|1|5|A|1958
3JAI|1|5|U|1959
3JAI|1|5|A|1960
3JAI|1|5|G|1961
3JAI|1|5|A|1962
3JAI|1|5|C|1963
3JAI|1|5|A|1964
3JAI|1|5|G|1965
*
3JAI|1|5|C|2022
3JAI|1|5|C|2023
3JAI|1|5|G|2024
3JAI|1|5|A|2025
3JAI|1|5|A|2026

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain m
eL40
Chain s
uL10

Coloring options:


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