IL_8C3A_057

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UCUAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

8C3A|1|1|A|1217

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90538.5

Basepair signature

cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L

Number of instances in this motif group

6

Unit IDs

8C3A|1|1|U|1214
8C3A|1|1|C|1215
8C3A|1|1|U|1216
8C3A|1|1|A|1217
8C3A|1|1|G|1218
8C3A|1|1|A|1219
8C3A|1|1|C|1220
8C3A|1|1|A|1221
8C3A|1|1|G|1222
*
8C3A|1|1|C|1279
8C3A|1|1|C|1280
8C3A|1|1|G|1281
8C3A|1|1|A|1282
8C3A|1|1|A|1283

Current chains

Chain 1

25S

Nearby chains

Chain 0

60S ribosomal protein L20

Chain AN

60S ribosomal protein L40-B

Chain P0

60S acidic ribosomal protein P0