3D structure

PDB id
3JAI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon
Experimental method
ELECTRON MICROSCOPY
Resolution
3.65 Å

Loop

Sequence
GUAGUAG*CGAAAC
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3JAI_089 not in the Motif Atlas
Homologous match to IL_5TBW_061
Geometric discrepancy: 0.0793
The information below is about IL_5TBW_061
Detailed Annotation
7x6 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_76042.3
Basepair signature
cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
9

Unit IDs

3JAI|1|5|G|2358
3JAI|1|5|U|2359
3JAI|1|5|A|2360
3JAI|1|5|G|2361
3JAI|1|5|U|2362
3JAI|1|5|A|2363
3JAI|1|5|G|2364
*
3JAI|1|5|C|3858
3JAI|1|5|G|3859
3JAI|1|5|A|3860
3JAI|1|5|A|3861
3JAI|1|5|A|3862
3JAI|1|5|C|3863

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain 1
peptide
Chain C
uL4
Chain P
uL22

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1587 s