IL_3JAI_146

3D structure

PDB id

3JAI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

CCAU*AGGCG

Length

9 nucleotides

Bulged bases

3JAI|1|5|C|4720

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAI_146 not in the Motif Atlas

Homologous match to IL_8C3A_123

Geometric discrepancy: 0.149

The information below is about IL_8C3A_123

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

3JAI|1|5|C|4582
3JAI|1|5|C|4583
3JAI|1|5|A|4584
3JAI|1|5|U|4585
*
3JAI|1|5|A|4717
3JAI|1|5|G|4718
3JAI|1|5|G|4719
3JAI|1|5|C|4720
3JAI|1|5|G|4721

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

uL3

Chain O

uL13