IL_8C3A_123

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAAU*AGAACG

Length

10 nucleotides

Bulged bases

8C3A|1|1|A|3114, 8C3A|1|1|C|3115

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

8C3A|1|1|C|2976
8C3A|1|1|A|2977
8C3A|1|1|A|2978
8C3A|1|1|U|2979
*
8C3A|1|1|A|3111
8C3A|1|1|G|3112
8C3A|1|1|A|3113
8C3A|1|1|A|3114
8C3A|1|1|C|3115
8C3A|1|1|G|3116

Current chains

Chain 1

25S

Nearby chains

Chain k

60S ribosomal protein L3

Chain w

Ribosomal protein L13