3D structure

PDB id
3JAI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon
Experimental method
ELECTRON MICROSCOPY
Resolution
3.65 Å

Loop

Sequence
CUCAGUAC*GGAACCG
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3JAI_148 not in the Motif Atlas
Homologous match to IL_8C3A_125
Geometric discrepancy: 0.088
The information below is about IL_8C3A_125
Detailed Annotation
8x7 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_04346.8
Basepair signature
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
15

Unit IDs

3JAI|1|5|C|4596
3JAI|1|5|U|4597
3JAI|1|5|C|4598
3JAI|1|5|A|4599
3JAI|1|5|G|4600
3JAI|1|5|U|4601
3JAI|1|5|A|4602
3JAI|1|5|C|4603
*
3JAI|1|5|G|4608
3JAI|1|5|G|4609
3JAI|1|5|A|4610
3JAI|1|5|A|4611
3JAI|1|5|C|4612
3JAI|1|5|C|4613
3JAI|1|5|G|4614

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain B
uL3
Chain H
uL6
Chain V
uL14
Chain jj
ABCE1
Chain m
eL40

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.0745 s