IL_8C3A_125

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUUAGUAC*GGAACCG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.8

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

8C3A|1|1|C|2990
8C3A|1|1|U|2991
8C3A|1|1|U|2992
8C3A|1|1|A|2993
8C3A|1|1|G|2994
8C3A|1|1|U|2995
8C3A|1|1|A|2996
8C3A|1|1|C|2997
*
8C3A|1|1|G|3002
8C3A|1|1|G|3003
8C3A|1|1|A|3004
8C3A|1|1|A|3005
8C3A|1|1|C|3006
8C3A|1|1|C|3007
8C3A|1|1|G|3008

Current chains

Chain 1

25S

Nearby chains

Chain 6

60S ribosomal protein L23-A

Chain AN

60S ribosomal protein L40-B

Chain k

60S ribosomal protein L3

Chain q

60S ribosomal protein L9-B