IL_3JAI_205

3D structure

PDB id

3JAI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

3JAI|1|9|A|628

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAI_205 not in the Motif Atlas

Homologous match to IL_8C3A_425

Geometric discrepancy: 0.192

The information below is about IL_8C3A_425

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.2

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

3JAI|1|9|G|611
3JAI|1|9|U|612
3JAI|1|9|G|613
3JAI|1|9|C|614
3JAI|1|9|C|615
3JAI|1|9|A|616
3JAI|1|9|G|617
*
3JAI|1|9|C|624
3JAI|1|9|G|625
3JAI|1|9|G|626
3JAI|1|9|U|627
3JAI|1|9|A|628
3JAI|1|9|A|629
3JAI|1|9|U|630
3JAI|1|9|U|631
3JAI|1|9|C|632

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain DD

uS3

Chain XX

uS12

Chain ee

eS30

Chain hh

mRNA

Chain ii

eRF1