Motif IL_54177.2 Version IL_54177.2 of this group appears in releases 3.91 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 13 | 1-13 | 2-5 | 2-12 | 6-9 | 6-12 | 7-8 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_8C3A_425 | 8C3A | 0.2187 | 3 | Kink-turn related | CM | SSU rRNA | G | 560 | U | 561 | G | 562 | C | 563 | C | 564 | A | 565 | G | 566 | * | C | 573 | G | 574 | G | 575 | U | 576 | A | 578 | C | 581 | cWW | ntHS | cWW | |||
| 2 | IL_8P9A_404 | 8P9A | 0.0000 | 3 | Kink-turn related (H) | sR | SSU rRNA | G | 562 | U | 563 | G | 564 | C | 565 | C | 566 | A | 567 | G | 568 | * | C | 575 | G | 576 | G | 577 | U | 578 | A | 580 | C | 583 | cWW | cSW | tWH | ntHS | ntWW | cWW |
| 3 | IL_5J7L_025 | 5J7L | 0.2137 | 3 | Kink-turn related | AA | SSU rRNA | G | 515 | PSU | 516 | G | 517 | C | 518 | C | 519 | A | 520 | G | 521 | * | C | 528 | G | 529 | G | 530 | U | 531 | A | 533 | C | 536 | cWW | cSW | tWH | tHS | ntWW | cWW |
| 4 | IL_4LFB_021 | 4LFB | 0.2148 | 3 | Kink-turn related | A | SSU rRNA | G | 515 | PSU | 516 | G | 517 | C | 518 | C | 519 | A | 520 | G | 521 | * | C | 528 | G | 529 | G | 530 | U | 531 | A | 533 | C | 536 | cWW | cSW | tWH | tHS | ntWW | cWW |
| 5 | IL_6CZR_133 | 6CZR | 0.2991 | 3 | Kink-turn related | 1a | SSU rRNA | G | 499 | PSU | 500 | G | 501 | C | 502 | C | 503 | A | 504 | G | 505 | * | C | 512 | G | 513 | G | 514 | U | 515 | A | 517 | C | 520 | cWW | ntWH | ntHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| G(PSU)GCCAG*CGGUAAUAC | 3 |
| GUGCCAG*CGGUAAUUC | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| (PSU)GCCA*GGUAAUA | 3 |
| UGCCA*GGUAAUU | 2 |
- Annotations
-
- Kink-turn related (4)
- Kink-turn related (H) (1)
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Heat map statistics
- Min 0.14 | Avg 0.22 | Max 0.40
Coloring options: