IL_8C3A_425

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

8C3A|1|CM|A|577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.2

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

8C3A|1|CM|G|560
8C3A|1|CM|U|561
8C3A|1|CM|G|562
8C3A|1|CM|C|563
8C3A|1|CM|C|564
8C3A|1|CM|A|565
8C3A|1|CM|G|566
*
8C3A|1|CM|C|573
8C3A|1|CM|G|574
8C3A|1|CM|G|575
8C3A|1|CM|U|576
8C3A|1|CM|A|577
8C3A|1|CM|A|578
8C3A|1|CM|U|579
8C3A|1|CM|U|580
8C3A|1|CM|C|581

Current chains

Chain CM

18S

Nearby chains

Chain CL

60S ribosomal protein CAALFM_C304810CA

Chain CQ

Ribosomal protein S3

Chain DK

Ribosomal protein S23 (S12)

Chain DR

40S ribosomal protein S30