IL_3JAI_207

3D structure

PDB id

3JAI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

3JAI|1|9|A|668

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAI_207 not in the Motif Atlas

Geometric match to IL_4V88_416

Geometric discrepancy: 0.1549

The information below is about IL_4V88_416

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.3

Basepair signature

cWW-L-cWW-R-L-R

Number of instances in this motif group

5

Unit IDs

3JAI|1|9|G|665
3JAI|1|9|U|666
3JAI|1|9|U|667
3JAI|1|9|A|668
3JAI|1|9|A|669
3JAI|1|9|A|670
3JAI|1|9|A|671
*
3JAI|1|9|U|1161
3JAI|1|9|C|1162

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain CC

uS5

Chain XX

uS12

Chain aa

eS26