3D structure

PDB id
3JAI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon
Experimental method
ELECTRON MICROSCOPY
Resolution
3.65 Å

Loop

Sequence
UGCAUGG*UCUGUGAUG
Length
16 nucleotides
Bulged bases
3JAI|1|9|C|1331, 3JAI|1|9|U|1494, 3JAI|1|9|G|1497
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3JAI_283 not in the Motif Atlas
Homologous match to IL_8P9A_439
Geometric discrepancy: 0.1226
The information below is about IL_8P9A_439
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_86012.1
Basepair signature
cWW-tHS-tWH-cWH-cWW-L-L-cWW
Number of instances in this motif group
1

Unit IDs

3JAI|1|9|U|1329
3JAI|1|9|G|1330
3JAI|1|9|C|1331
3JAI|1|9|A|1332
3JAI|1|9|U|1333
3JAI|1|9|G|1334
3JAI|1|9|G|1335
*
3JAI|1|9|U|1492
3JAI|1|9|C|1493
3JAI|1|9|U|1494
3JAI|1|9|G|1495
3JAI|1|9|U|1496
3JAI|1|9|G|1497
3JAI|1|9|A|1498
3JAI|1|9|U|1499
3JAI|1|9|G|1500

Current chains

Chain 9
18S ribosomal RNA

Nearby chains

Chain DD
uS3
Chain KK
eS10
Chain UU
uS10
Chain dd
uS14
Chain hh
mRNA
Chain ii
eRF1

Coloring options:


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