3D structure

PDB id
3JAJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the engaged state of the mammalian SRP-ribosome complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.75 Å

Loop

Sequence
GUGAAAC*GUGGAUC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3JAJ_026 not in the Motif Atlas
Geometric match to IL_4V9F_001
Geometric discrepancy: 0.1404
The information below is about IL_4V9F_001
Detailed Annotation
Triple sheared with non-canonical cWW
Broad Annotation
Triple sheared
Motif group
IL_22311.1
Basepair signature
cWW-cWW-tSH-tHS-tHS-L-R-cWW
Number of instances in this motif group
10

Unit IDs

3JAJ|1|5|G|415
3JAJ|1|5|U|416
3JAJ|1|5|G|417
3JAJ|1|5|A|418
3JAJ|1|5|A|419
3JAJ|1|5|A|420
3JAJ|1|5|C|421
*
3JAJ|1|8|G|13
3JAJ|1|8|U|14
3JAJ|1|8|G|15
3JAJ|1|8|G|16
3JAJ|1|8|A|17
3JAJ|1|8|U|18
3JAJ|1|8|C|19

Current chains

Chain 5
28S ribosomal RNA
Chain 8
5.8S ribosomal RNA

Nearby chains

Chain 2
Nascent chain
Chain C
Ribosomal protein uL4
Chain P
Ribosomal protein uL22
Chain e
Ribosomal protein eL32

Coloring options:


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