IL_3JAJ_140
3D structure
- PDB id
- 3JAJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the engaged state of the mammalian SRP-ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.75 Å
Loop
- Sequence
- CUCAGUAC*GGAACCG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JAJ_140 not in the Motif Atlas
- Homologous match to IL_8C3A_125
- Geometric discrepancy: 0.15
- The information below is about IL_8C3A_125
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
3JAJ|1|5|C|4596
3JAJ|1|5|U|4597
3JAJ|1|5|C|4598
3JAJ|1|5|A|4599
3JAJ|1|5|G|4600
3JAJ|1|5|U|4601
3JAJ|1|5|A|4602
3JAJ|1|5|C|4603
*
3JAJ|1|5|G|4608
3JAJ|1|5|G|4609
3JAJ|1|5|A|4610
3JAJ|1|5|A|4611
3JAJ|1|5|C|4612
3JAJ|1|5|C|4613
3JAJ|1|5|G|4614
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain B
- Ribosomal protein uL3
- Chain H
- Ribosomal protein uL6
- Chain V
- Ribosomal protein uL14
- Chain m
- Ribosomal protein eL40
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