IL_3JAJ_246

3D structure

PDB id

3JAJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the engaged state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CCGCU*GGCG

Length

9 nucleotides

Bulged bases

3JAJ|1|5|C|183

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAJ_246 not in the Motif Atlas

Geometric match to IL_1GID_008

Geometric discrepancy: 0.3305

The information below is about IL_1GID_008

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

3JAJ|1|5|C|180
3JAJ|1|5|C|181
3JAJ|1|5|G|182
3JAJ|1|5|C|183
3JAJ|1|5|U|184
*
3JAJ|1|5|G|253
3JAJ|1|5|G|254
3JAJ|1|5|C|255
3JAJ|1|5|G|256

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain h

Ribosomal protein uL29