IL_3JAJ_259

3D structure

PDB id

3JAJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the engaged state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GGCC*GAUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAJ_259 not in the Motif Atlas

Geometric match to IL_1JID_002

Geometric discrepancy: 0.2329

The information below is about IL_1JID_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

3JAJ|1|5|G|1760
3JAJ|1|5|G|1761
3JAJ|1|5|C|1762
3JAJ|1|5|C|1763
*
3JAJ|1|5|G|1769
3JAJ|1|5|A|1770
3JAJ|1|5|U|1771
3JAJ|1|5|C|1772

Current chains

Chain 5

28S ribosomal RNA

Nearby chains