3D structure

PDB id
3JAM (explore in PDB, NAKB, or RNA 3D Hub)
Description
CryoEM structure of 40S-eIF1A-eIF1 complex from yeast
Experimental method
ELECTRON MICROSCOPY
Resolution
3.46 Å

Loop

Sequence
GUUAAAA*UC
Length
9 nucleotides
Bulged bases
3JAM|1|2|A|618
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3JAM_034 not in the Motif Atlas
Homologous match to IL_4V88_416
Geometric discrepancy: 0.1302
The information below is about IL_4V88_416
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_38186.3
Basepair signature
cWW-L-cWW-R-L-R
Number of instances in this motif group
5

Unit IDs

3JAM|1|2|G|615
3JAM|1|2|U|616
3JAM|1|2|U|617
3JAM|1|2|A|618
3JAM|1|2|A|619
3JAM|1|2|A|620
3JAM|1|2|A|621
*
3JAM|1|2|U|1103
3JAM|1|2|C|1104

Current chains

Chain 2
18S rRNA

Nearby chains

Chain X
uS12
Chain a
eS26

Coloring options:


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