IL_3JAM_093

3D structure

PDB id

3JAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of 40S-eIF1A-eIF1 complex from yeast

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

AUAAGGAUUG*CUUGAUUU

Length

18 nucleotides

Bulged bases

3JAM|1|2|G|1227, 3JAM|1|2|U|1256

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAM_093 not in the Motif Atlas

Homologous match to IL_8P9A_470

Geometric discrepancy: 0.3687

The information below is about IL_8P9A_470

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28304.1

Basepair signature

cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW

Number of instances in this motif group

1

Unit IDs

3JAM|1|2|A|1223
3JAM|1|2|U|1224
3JAM|1|2|A|1225
3JAM|1|2|A|1226
3JAM|1|2|G|1227
3JAM|1|2|G|1228
3JAM|1|2|A|1229
3JAM|1|2|U|1230
3JAM|1|2|U|1231
3JAM|1|2|G|1232
*
3JAM|1|2|C|1251
3JAM|1|2|U|1252
3JAM|1|2|U|1253
3JAM|1|2|G|1254
3JAM|1|2|A|1255
3JAM|1|2|U|1256
3JAM|1|2|U|1257
3JAM|1|2|U|1258

Current chains

Chain 2

18S rRNA

Nearby chains

Chain K

eS10

Chain M

eS12

Chain d

uS14

Chain f

eS31