IL_3JAN_002

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GAGGAU*AGACC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_83249.1

Basepair signature

cWW-L-R-R-R-L-L-L-cWW

Number of instances in this motif group

2

Unit IDs

3JAN|1|4|G|55
3JAN|1|4|A|56
3JAN|1|4|G|57
3JAN|1|4|G|58
3JAN|1|4|A|59
3JAN|1|4|U|60
*
3JAN|1|4|A|287
3JAN|1|4|G|288
3JAN|1|4|A|289
3JAN|1|4|C|290
3JAN|1|4|C|291

Current chains

Chain 4

SRP 7S RNA

Nearby chains

Chain S1

SRP9

Chain S4

SRP14