IL_3JAN_034

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GAU*AC

Length

5 nucleotides

Bulged bases

3JAN|1|5|A|509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAN_034 not in the Motif Atlas

Geometric match to IL_1U63_004

Geometric discrepancy: 0.3225

The information below is about IL_1U63_004

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

3JAN|1|5|G|508
3JAN|1|5|A|509
3JAN|1|5|U|510
*
3JAN|1|5|A|649
3JAN|1|5|C|650

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain L

Ribosomal protein eL13

Chain a

Ribosomal protein uL15