IL_3JAN_058

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAN_058 not in the Motif Atlas

Geometric match to IL_5TBW_030

Geometric discrepancy: 0.212

The information below is about IL_5TBW_030

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

3JAN|1|5|C|1551
3JAN|1|5|G|1552
3JAN|1|5|A|1553
3JAN|1|5|A|1554
3JAN|1|5|G|1555
*
3JAN|1|5|U|1572
3JAN|1|5|G|1573
3JAN|1|5|G|1574
3JAN|1|5|A|1575
3JAN|1|5|G|1576

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain A

Ribosomal protein uL2

Chain R

Ribosomal protein eL19

Chain p

Ribosomal protein eL43